Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS00650 | Not Available | Negative | 129709 - 130314 | 21143.9 |
| gnat family n-acetyltransferase | VO01_RS16510 | Not Available | Negative | 130444 - 131001 | 20164.6 |
| putative immunity protein | VO01_RS00660 | Not Available | Negative | 131146 - 131562 | 14302.0 |
| gnat family n-acetyltransferase | VO01_RS00665 | Not Available | Negative | 131603 - 132118 | 18502.9 |
| phosphotransferase | VO01_RS00670 | Not Available | Negative | 132151 - 133233 | 37460.8 |
| ribonuclease j | VO01_RS00675 | Not Available | Negative | 133279 - 134973 | 61276.2 |
| sulp family inorganic anion transporter | VO01_RS00680 | Not Available | Positive | 135470 - 137005 | 53179.5 |
| hypothetical protein | VO01_RS00685 | Not Available | Positive | 137225 - 137569 | 11704.6 |
| hypothetical protein | VO01_RS00690 | Not Available | Positive | 137569 - 137778 | 7414.64 |
| hypothetical protein | VO01_RS00695 | Not Available | Positive | 137873 - 138082 | 8467.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
