Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ala | Not Available | Not Available | Positive | 2409430 - 2409505 | Not Available |
| hypothetical protein | VO01_RS11380 | Not Available | Negative | 2409573 - 2410532 | 33806.5 |
| gnat family n-acetyltransferase | VO01_RS11385 | Not Available | Negative | 2410630 - 2411298 | 24957.8 |
| utp--glucose-1-phosphate uridylyltransferase galu | VO01_RS11390 | Not Available | Negative | 2411356 - 2412252 | 32719.5 |
| 5-formyltetrahydrofolate cyclo-ligase | VO01_RS11395 | Not Available | Positive | 2412293 - 2412868 | 21127.1 |
| fmdb family zinc ribbon protein | VO01_RS11400 | Not Available | Positive | 2412875 - 2413285 | 13188.5 |
| large conductance mechanosensitive channel protein mscl | VO01_RS11405 | Not Available | Positive | 2413314 - 2413796 | 16612.4 |
| is481-like element is1122 family transposase | VO01_RS11410 | Not Available | Negative | 2413810 - 2414769 | 35987.6 |
| phosphoenolpyruvate--protein phosphotransferase | VO01_RS11415 | Not Available | Negative | 2414867 - 2416522 | 56535.4 |
| yihy/virulence factor brkb family protein | VO01_RS11420 | Not Available | Positive | 2416647 - 2417753 | 38588.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
