Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease subunit | VO01_RS11275 | Not Available | Positive | 2386128 - 2386952 | 27217.5 |
| abc transporter atp-binding protein | VO01_RS11280 | Not Available | Positive | 2386949 - 2388397 | 49597.1 |
| 30s ribosomal protein s6 | VO01_RS11285 | Not Available | Negative | 2388405 - 2389252 | 29965.1 |
| gnat family n-acetyltransferase | VO01_RS11290 | Not Available | Negative | 2389281 - 2389808 | 19328.9 |
| ribonucleotide-diphosphate reductase subunit beta | VO01_RS11295 | Not Available | Negative | 2389942 - 2390937 | 38311.6 |
| ribonucleoside-diphosphate reductase subunit alpha | VO01_RS11300 | Not Available | Negative | 2391102 - 2393606 | 92812.1 |
| mfs transporter | VO01_RS11305 | Not Available | Positive | 2393936 - 2395147 | 41249.3 |
| hypothetical protein | VO01_RS11310 | Not Available | Positive | 2395263 - 2395721 | 15282.6 |
| aldo/keto reductase | VO01_RS11315 | Not Available | Negative | 2395784 - 2396776 | 35351.1 |
| hypothetical protein | VO01_RS11320 | Not Available | Negative | 2396786 - 2397199 | 14355.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
