Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is481-like element is1122 family transposase | VO01_RS11225 | Not Available | Negative | 2370428 - 2371387 | 36001.6 |
| thioredoxin domain-containing protein | VO01_RS11230 | Not Available | Negative | 2371469 - 2373424 | 67369.9 |
| magnesium and cobalt transport protein cora | VO01_RS11235 | Not Available | Negative | 2373481 - 2374656 | 43736.9 |
| aldo/keto reductase | VO01_RS11240 | Not Available | Negative | 2374704 - 2375546 | 30305.0 |
| long-chain-fatty-acid--coa ligase | VO01_RS11245 | Not Available | Negative | 2375543 - 2377129 | 56679.1 |
| atp-dependent rna helicase hrpa | VO01_RS11250 | Not Available | Positive | 2377270 - 2381088 | 141615.0 |
| allophanate hydrolase | VO01_RS11255 | Not Available | Positive | 2381352 - 2383028 | 56495.2 |
| shikimate kinase | VO01_RS11260 | Not Available | Positive | 2383072 - 2383566 | 18373.8 |
| abc transporter substrate-binding protein | VO01_RS11265 | Not Available | Positive | 2383631 - 2385160 | 52821.2 |
| abc transporter permease | VO01_RS11270 | Not Available | Positive | 2385157 - 2386131 | 32630.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
