Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS16360 | Not Available | Positive | 2320504 - 2320923 | 14555.3 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | VO01_RS10985 | Not Available | Negative | 2320957 - 2321895 | 32093.0 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | VO01_RS10990 | Not Available | Negative | 2321906 - 2322817 | 32053.6 |
| tatd family hydrolase | VO01_RS10995 | Not Available | Negative | 2322814 - 2323764 | 34525.3 |
| methionine--trna ligase | VO01_RS11000 | Not Available | Negative | 2323837 - 2325414 | 59129.6 |
| bifunctional 2-methylcitrate synthase/citrate synthase | VO01_RS11005 | Not Available | Negative | 2325489 - 2326640 | 41536.4 |
| dihydrolipoyl dehydrogenase family protein | VO01_RS11010 | Not Available | Positive | 2326887 - 2328326 | 50129.7 |
| hypothetical protein | VO01_RS11015 | Not Available | Negative | 2328459 - 2329712 | 45075.4 |
| hypothetical protein | VO01_RS11020 | Not Available | Negative | 2329712 - 2330116 | 14685.2 |
| nad(p)h-dependent oxidoreductase | VO01_RS11025 | Not Available | Positive | 2330375 - 2330971 | 21153.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
