Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| general stress protein | VO01_RS10930 | Not Available | Positive | 2311001 - 2311498 | 17155.3 |
| acetyltransferase | VO01_RS10935 | Not Available | Negative | 2311560 - 2312162 | 20512.2 |
| hypothetical protein | VO01_RS10940 | Not Available | Positive | 2312282 - 2313559 | 45580.7 |
| nucleotidyltransferase domain-containing protein | VO01_RS10945 | Not Available | Negative | 2313567 - 2314382 | 28428.5 |
| thif family adenylyltransferase | VO01_RS10950 | Not Available | Negative | 2314379 - 2315566 | 41134.7 |
| hypothetical protein | VO01_RS10955 | Not Available | Positive | 2315565 - 2317271 | 61418.7 |
| alpha/beta fold hydrolase | VO01_RS10960 | Not Available | Negative | 2317288 - 2318148 | 31319.8 |
| cgnr zinc finger domain-containing protein | VO01_RS10965 | Not Available | Positive | 2318235 - 2318729 | 17770.2 |
| gnat family n-acetyltransferase | VO01_RS17110 | Not Available | Negative | 2318742 - 2319638 | 32753.9 |
| had family hydrolase | VO01_RS16355 | Not Available | Positive | 2319749 - 2320453 | 25122.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
