Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| moad/this family protein | VO01_RS10880 | Not Available | Positive | 2303684 - 2303950 | 8699.24 |
| hypothetical protein | VO01_RS10885 | Not Available | Positive | 2304016 - 2304339 | 11238.4 |
| voc family protein | VO01_RS10890 | Not Available | Negative | 2304422 - 2304904 | 17419.4 |
| duf1648 domain-containing protein | VO01_RS10895 | Not Available | Negative | 2305001 - 2305966 | 31839.3 |
| gntr family transcriptional regulator | VO01_RS10900 | Not Available | Negative | 2305963 - 2306313 | 12500.1 |
| laci family dna-binding transcriptional regulator | VO01_RS10905 | Not Available | Negative | 2306360 - 2307391 | 35225.2 |
| aldo/keto reductase | VO01_RS10910 | Not Available | Negative | 2307370 - 2309403 | 72395.2 |
| transcriptional regulator | VO01_RS10915 | Not Available | Negative | 2309573 - 2309884 | 11102.3 |
| hypothetical protein | VO01_RS10920 | Not Available | Negative | 2309884 - 2310363 | 16908.7 |
| marr family winged helix-turn-helix transcriptional regulator | VO01_RS10925 | Not Available | Negative | 2310417 - 2310893 | 17539.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
