Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent epimerase/dehydratase family protein | VO01_RS10735 | Not Available | Positive | 2276224 - 2277306 | 37835.8 |
| hypothetical protein | VO01_RS10740 | Not Available | Positive | 2277410 - 2277859 | 14920.4 |
| glucose 1-dehydrogenase | VO01_RS10745 | Not Available | Negative | 2277918 - 2278706 | 27367.3 |
| type ii caax prenyl endopeptidase rce1 family protein | VO01_RS10750 | Not Available | Negative | 2278784 - 2279806 | 35926.7 |
| dabb family protein | VO01_RS10755 | Not Available | Negative | 2279907 - 2280371 | 16567.3 |
| hypothetical protein | VO01_RS10760 | Not Available | Negative | 2280427 - 2280609 | 6179.85 |
| hypothetical protein | VO01_RS10765 | Not Available | Positive | 2280738 - 2281826 | 38126.4 |
| hypothetical protein | VO01_RS10770 | Not Available | Positive | 2281823 - 2282875 | 37272.4 |
| permease | VO01_RS10775 | Not Available | Positive | 2283293 - 2284198 | 32068.4 |
| tigr03943 family putative permease subunit | VO01_RS10780 | Not Available | Positive | 2284185 - 2285036 | 30116.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
