Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metq/nlpa family abc transporter substrate-binding protein | VO01_RS10640 | Not Available | Negative | 2259652 - 2260584 | 32278.1 |
| hypothetical protein | VO01_RS10645 | Not Available | Positive | 2260935 - 2261816 | 29229.2 |
| hypothetical protein | VO01_RS10650 | Not Available | Positive | 2261878 - 2262705 | 27330.7 |
| abc-f family atp-binding cassette domain-containing protein | VO01_RS10655 | Not Available | Negative | 2262718 - 2264535 | 65989.7 |
| mfs transporter | VO01_RS10660 | Not Available | Positive | 2264682 - 2265968 | 42921.3 |
| hypothetical protein | VO01_RS17490 | Not Available | Positive | 2266134 - 2266304 | 6119.13 |
| duf2142 domain-containing protein | VO01_RS10670 | Not Available | Positive | 2266441 - 2268162 | 59184.3 |
| gtra family protein | VO01_RS10675 | Not Available | Positive | 2268159 - 2268656 | 17772.4 |
| duf2304 domain-containing protein | VO01_RS10680 | Not Available | Negative | 2268545 - 2269054 | 18163.8 |
| glycosyltransferase family 2 protein | VO01_RS10685 | Not Available | Negative | 2269051 - 2269785 | 25999.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
