Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmu | VO01_RS10590 | Not Available | Negative | 2252205 - 2253749 | 54061.0 |
| Trna-gln | Not Available | Not Available | Positive | 2253798 - 2253872 | Not Available |
| hypothetical protein | VO01_RS10600 | Not Available | Negative | 2253949 - 2254167 | 7769.89 |
| marr family winged helix-turn-helix transcriptional regulator | VO01_RS10605 | Not Available | Positive | 2254220 - 2254723 | 18792.4 |
| trar/dksa family transcriptional regulator | VO01_RS10610 | Not Available | Negative | 2254760 - 2255116 | 12416.5 |
| llm class flavin-dependent oxidoreductase | VO01_RS10615 | Not Available | Negative | 2255124 - 2256137 | 35805.4 |
| lyse/argo family amino acid transporter | VO01_RS10620 | Not Available | Negative | 2256140 - 2256952 | 27236.2 |
| lysr family transcriptional regulator argp | VO01_RS10625 | Not Available | Positive | 2257025 - 2257918 | 31592.8 |
| methionine abc transporter permease | VO01_RS10630 | Not Available | Negative | 2257957 - 2258616 | 23126.4 |
| methionine abc transporter atp-binding protein | VO01_RS10635 | Not Available | Negative | 2258618 - 2259655 | 36918.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
