Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | VO01_RS10490 | Not Available | Negative | 2227629 - 2229620 | 74031.8 |
| pp2c family protein-serine/threonine phosphatase | VO01_RS10495 | Not Available | Negative | 2229617 - 2230813 | 42527.4 |
| acyltransferase family protein | VO01_RS10500 | Not Available | Positive | 2230990 - 2232144 | 40575.5 |
| Trna-leu | Not Available | Not Available | Positive | 2232162 - 2232236 | Not Available |
| nad(p)/fad-dependent oxidoreductase | VO01_RS10510 | Not Available | Negative | 2232351 - 2233838 | 52912.9 |
| s8 family serine peptidase | VO01_RS10515 | Not Available | Negative | 2233876 - 2235159 | 42922.8 |
| duf501 domain-containing protein | VO01_RS10520 | Not Available | Negative | 2235156 - 2235671 | 17827.1 |
| ftsb family cell division protein | VO01_RS10525 | Not Available | Negative | 2235668 - 2236225 | 20015.0 |
| phosphopyruvate hydratase | VO01_RS10530 | Not Available | Negative | 2236312 - 2237592 | 44849.8 |
| histidine--trna ligase | VO01_RS10535 | Not Available | Negative | 2237708 - 2239015 | 45799.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
