Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| winged helix-turn-helix domain-containing protein | VO01_RS10440 | Not Available | Positive | 2215320 - 2216558 | 45408.4 |
| hypothetical protein | VO01_RS10445 | Not Available | Positive | 2216555 - 2216845 | 10543.7 |
| lema family protein | VO01_RS10450 | Not Available | Negative | 2216856 - 2217422 | 20913.0 |
| glycoside hydrolase family 1 protein | VO01_RS10455 | Not Available | Negative | 2217516 - 2218934 | 50180.1 |
| hypothetical protein | VO01_RS10460 | Not Available | Positive | 2219247 - 2221448 | 71472.7 |
| amino acid permease | VO01_RS10465 | Not Available | Positive | 2221574 - 2223016 | 50709.7 |
| ferritin-like domain-containing protein | VO01_RS10470 | Not Available | Negative | 2223105 - 2224046 | 32227.9 |
| opgc domain-containing protein | VO01_RS10475 | Not Available | Negative | 2224230 - 2226839 | 94697.8 |
| atp-binding protein | VO01_RS10480 | Not Available | Negative | 2226855 - 2227304 | 16176.1 |
| stas domain-containing protein | VO01_RS10485 | Not Available | Negative | 2227294 - 2227632 | 12011.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
