Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| paqr family membrane homeostasis protein trha | VO01_RS10390 | Not Available | Positive | 2205918 - 2206673 | 27231.7 |
| extracellular solute-binding protein | VO01_RS10395 | Not Available | Negative | 2206698 - 2208077 | 48626.8 |
| carbohydrate abc transporter permease | VO01_RS10400 | Not Available | Negative | 2208140 - 2209051 | 32233.2 |
| carbohydrate abc transporter permease | VO01_RS10405 | Not Available | Negative | 2209048 - 2210037 | 35410.8 |
| hypothetical protein | VO01_RS10410 | Not Available | Negative | 2210204 - 2210554 | 12544.0 |
| mycothiol conjugate amidase mca | VO01_RS10415 | Not Available | Negative | 2210551 - 2211432 | 32526.1 |
| duf4307 domain-containing protein | VO01_RS10420 | Not Available | Positive | 2211499 - 2211981 | 17512.7 |
| transcription elongation factor grea | VO01_RS10425 | Not Available | Positive | 2212042 - 2212530 | 17672.7 |
| threonine ammonia-lyase | VO01_RS10430 | Not Available | Negative | 2212612 - 2213988 | 48301.1 |
| ai-2e family transporter | VO01_RS10435 | Not Available | Negative | 2213985 - 2215220 | 43092.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
