Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | VO01_RS10340 | Not Available | Negative | 2196088 - 2197122 | 37118.0 |
| exodeoxyribonuclease vii large subunit | VO01_RS10345 | Not Available | Positive | 2197225 - 2198541 | 46922.9 |
| exodeoxyribonuclease vii small subunit | VO01_RS10350 | Not Available | Positive | 2198552 - 2198797 | 8616.93 |
| duf4245 domain-containing protein | VO01_RS10355 | Not Available | Positive | 2198800 - 2199507 | 24546.4 |
| carbonic anhydrase | VO01_RS10360 | Not Available | Positive | 2199504 - 2200166 | 22994.5 |
| class ii fumarate hydratase | VO01_RS10365 | Not Available | Positive | 2200246 - 2201673 | 49872.5 |
| hypothetical protein | VO01_RS10370 | Not Available | Positive | 2202309 - 2203097 | 26157.7 |
| hypothetical protein | VO01_RS10375 | Not Available | Positive | 2203110 - 2203385 | 10186.1 |
| phoh family protein | VO01_RS10380 | Not Available | Negative | 2203467 - 2204813 | 48533.1 |
| isoprenyl transferase | VO01_RS10385 | Not Available | Negative | 2205050 - 2205835 | 29512.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
