Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine phosphatase family protein | VO01_RS10290 | Not Available | Positive | 2184135 - 2184827 | 24008.3 |
| duf3090 domain-containing protein | VO01_RS10295 | Not Available | Positive | 2184851 - 2185408 | 20231.7 |
| sco1664 family protein | VO01_RS10300 | Not Available | Positive | 2185408 - 2186175 | 27759.8 |
| dead/deah box helicase family protein | VO01_RS10305 | Not Available | Negative | 2186337 - 2188673 | 87241.8 |
| site-specific dna-methyltransferase | VO01_RS10310 | Not Available | Negative | 2188677 - 2190632 | 73487.8 |
| redox-regulated atpase ychf | VO01_RS10315 | Not Available | Negative | 2190794 - 2191867 | 38709.1 |
| 3'-5' exonuclease | VO01_RS10320 | Not Available | Positive | 2191967 - 2192596 | 21814.7 |
| dna recombination protein rmuc | VO01_RS10325 | Not Available | Positive | 2192663 - 2194042 | 49654.5 |
| class ii fructose-bisphosphate aldolase | VO01_RS10330 | Not Available | Positive | 2194148 - 2195173 | 36307.6 |
| duf6264 family protein | VO01_RS10335 | Not Available | Negative | 2195258 - 2196091 | 29092.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
