Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 18 protein | VO01_RS00500 | Not Available | Positive | 99700 - 100755 | 36671.9 |
| hydrolase | VO01_RS00505 | Not Available | Positive | 100752 - 101774 | 34730.1 |
| hypothetical protein | VO01_RS00510 | Not Available | Positive | 101982 - 102722 | 26769.3 |
| abc transporter atp-binding protein | VO01_RS00515 | Not Available | Positive | 102793 - 103716 | 32298.3 |
| iron-siderophore abc transporter substrate-binding protein | VO01_RS00520 | Not Available | Positive | 103713 - 104702 | 33425.9 |
| iron abc transporter permease | VO01_RS00525 | Not Available | Positive | 104717 - 106873 | 70720.4 |
| maue/doxx family redox-associated membrane protein | VO01_RS00530 | Not Available | Positive | 106994 - 107479 | 16663.9 |
| hypothetical protein | VO01_RS00540 | Not Available | Positive | 107750 - 108193 | 15766.8 |
| sensor histidine kinase | VO01_RS00545 | Not Available | Positive | 108444 - 109937 | 53080.7 |
| response regulator transcription factor | VO01_RS00550 | Not Available | Positive | 109964 - 110626 | 23665.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
