Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cynx/nimt family mfs transporter | VO01_RS09945 | Not Available | Negative | 2096856 - 2098118 | 43347.4 |
| maleylpyruvate isomerase family mycothiol-dependent enzyme | VO01_RS09950 | Not Available | Positive | 2098156 - 2098857 | 24790.5 |
| bifunctional riboflavin kinase/fad synthetase | VO01_RS09955 | Not Available | Negative | 2098854 - 2099786 | 33201.8 |
| hypothetical protein | VO01_RS09960 | Not Available | Negative | 2099789 - 2100250 | 16717.6 |
| hypothetical protein | VO01_RS09965 | Not Available | Negative | 2100289 - 2100657 | 12797.3 |
| trna pseudouridine(55) synthase trub | VO01_RS09970 | Not Available | Negative | 2100654 - 2101604 | 33489.8 |
| ketopantoate reductase family protein | VO01_RS09975 | Not Available | Positive | 2101691 - 2102686 | 34200.0 |
| hypothetical protein | VO01_RS09980 | Not Available | Negative | 2102720 - 2103286 | 19725.3 |
| a/g-specific adenine glycosylase | VO01_RS09985 | Not Available | Positive | 2103325 - 2104203 | 31463.5 |
| 30s ribosome-binding factor rbfa | VO01_RS09990 | Not Available | Negative | 2104247 - 2104753 | 18373.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
