Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative quinol monooxygenase | VO01_RS09895 | Not Available | Negative | 2085994 - 2086311 | 10787.8 |
| pyruvate dehydrogenase | VO01_RS09900 | Not Available | Negative | 2086358 - 2088112 | 61562.0 |
| duf1684 domain-containing protein | VO01_RS09905 | Not Available | Positive | 2088230 - 2088973 | 27424.9 |
| s9 family peptidase | VO01_RS09910 | Not Available | Negative | 2089033 - 2091174 | 76324.2 |
| tetr/acrr family transcriptional regulator | VO01_RS09915 | Not Available | Positive | 2091311 - 2092216 | 31714.3 |
| gdsl-type esterase/lipase family protein | VO01_RS09920 | Not Available | Negative | 2092213 - 2092812 | 20788.4 |
| hypothetical protein | VO01_RS09925 | Not Available | Negative | 2092889 - 2093329 | 14981.3 |
| sdr family oxidoreductase | VO01_RS09930 | Not Available | Negative | 2093326 - 2094852 | 54896.9 |
| srpbcc domain-containing protein | VO01_RS09935 | Not Available | Negative | 2094950 - 2095723 | 28177.6 |
| rok family protein | VO01_RS09940 | Not Available | Positive | 2095899 - 2096837 | 31828.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
