Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS17085 | Not Available | Positive | 2053172 - 2054017 | 31049.9 |
| mfs transporter | VO01_RS09760 | Not Available | Negative | 2054045 - 2055259 | 40218.9 |
| spfh domain-containing protein | VO01_RS09765 | Not Available | Negative | 2055309 - 2056763 | 50902.1 |
| nfed family protein | VO01_RS09770 | Not Available | Negative | 2056795 - 2057283 | 16153.9 |
| hypothetical protein | VO01_RS09775 | Not Available | Positive | 2057467 - 2057727 | 9900.36 |
| abc transporter substrate-binding protein | VO01_RS09780 | Not Available | Positive | 2057847 - 2059202 | 48801.8 |
| carbohydrate abc transporter permease | VO01_RS09785 | Not Available | Positive | 2059199 - 2060215 | 36619.0 |
| carbohydrate abc transporter permease | VO01_RS09790 | Not Available | Positive | 2060212 - 2061180 | 34782.6 |
| glycoside hydrolase family 2 tim barrel-domain containing protein | VO01_RS09795 | Not Available | Positive | 2061317 - 2064385 | 112436.0 |
| d-arabinono-1,4-lactone oxidase | VO01_RS09800 | Not Available | Positive | 2064496 - 2065782 | 46334.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
