Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | VO01_RS09715 | Not Available | Negative | 2042896 - 2045397 | 92177.9 |
| lysine n(6)-hydroxylase/l-ornithine n(5)-oxygenase family protein | VO01_RS09720 | Not Available | Negative | 2045394 - 2046764 | 50058.2 |
| pyridoxal phosphate-dependent decarboxylase family protein | VO01_RS09725 | Not Available | Negative | 2046761 - 2048371 | 56859.3 |
| phosphoribosylaminoimidazolecarboxamide formyltransferase | VO01_RS09730 | Not Available | Negative | 2048576 - 2049736 | 41131.8 |
| hypothetical protein | VO01_RS09735 | Not Available | Positive | 2049912 - 2050223 | 10314.2 |
| hypothetical protein | VO01_RS17485 | Not Available | Positive | 2050225 - 2050380 | 5134.46 |
| hypothetical protein | VO01_RS09740 | Not Available | Positive | 2050483 - 2050767 | 9818.75 |
| hypothetical protein | VO01_RS09745 | Not Available | Positive | 2050764 - 2051057 | 9797.66 |
| glucose 1-dehydrogenase | VO01_RS09750 | Not Available | Positive | 2051104 - 2052000 | 31314.6 |
| rieske 2fe-2s domain-containing protein | VO01_RS09755 | Not Available | Positive | 2052203 - 2053084 | 30751.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
