Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotide exchange factor grpe | VO01_RS00450 | Not Available | Positive | 91703 - 92371 | 23543.1 |
| dnaj c-terminal domain-containing protein | VO01_RS00455 | Not Available | Positive | 92492 - 93508 | 35607.8 |
| heat shock protein transcriptional repressor hspr | VO01_RS00460 | Not Available | Positive | 93528 - 93983 | 16613.9 |
| class i sam-dependent methyltransferase | VO01_RS00465 | Not Available | Positive | 93980 - 95191 | 42001.0 |
| helix-turn-helix domain-containing protein | VO01_RS00470 | Not Available | Negative | 95256 - 95492 | 8263.08 |
| hypothetical protein | VO01_RS00475 | Not Available | Negative | 95492 - 96130 | 21388.3 |
| bluf domain-containing protein | VO01_RS00480 | Not Available | Negative | 96211 - 96630 | 15780.5 |
| 2'-5' rna ligase family protein | VO01_RS00485 | Not Available | Negative | 97048 - 97776 | 26708.2 |
| laci family dna-binding transcriptional regulator | VO01_RS00490 | Not Available | Negative | 97983 - 99011 | 35292.4 |
| hypothetical protein | VO01_RS00495 | Not Available | Negative | 99135 - 99455 | 11092.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
