Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenine phosphoribosyltransferase | VO01_RS09520 | Not Available | Negative | 2006067 - 2006594 | 17791.6 |
| m50 family metallopeptidase | VO01_RS09525 | Not Available | Positive | 2006700 - 2007431 | 24740.0 |
| aldo/keto reductase | VO01_RS09530 | Not Available | Negative | 2007500 - 2008333 | 30500.7 |
| signal peptidase ii | VO01_RS09535 | Not Available | Negative | 2008357 - 2008959 | 20856.3 |
| hypothetical protein | VO01_RS09540 | Not Available | Negative | 2008969 - 2009496 | 17763.7 |
| type 1 glutamine amidotransferase domain-containing protein | VO01_RS09545 | Not Available | Negative | 2009544 - 2010110 | 20088.2 |
| smp-30/gluconolactonase/lre family protein | VO01_RS09550 | Not Available | Negative | 2010164 - 2011066 | 31973.4 |
| dps family protein | VO01_RS09555 | Not Available | Positive | 2011310 - 2011870 | 20836.2 |
| sdr family nad(p)-dependent oxidoreductase | VO01_RS09560 | Not Available | Positive | 2011992 - 2012789 | 28166.2 |
| duf2945 domain-containing protein | VO01_RS09565 | Not Available | Positive | 2012789 - 2012998 | 7579.72 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
