Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent thymidylate synthase | VO01_RS09420 | Not Available | Negative | 1983613 - 1984404 | 30124.6 |
| tigr01777 family oxidoreductase | VO01_RS09425 | Not Available | Positive | 1984501 - 1985421 | 32590.0 |
| hypothetical protein | VO01_RS09430 | Not Available | Negative | 1985463 - 1985912 | 15867.6 |
| 4-hydroxy-tetrahydrodipicolinate reductase | VO01_RS09435 | Not Available | Negative | 1985912 - 1986745 | 28374.7 |
| histidine phosphatase family protein | VO01_RS09440 | Not Available | Negative | 1986804 - 1987406 | 22132.3 |
| m16 family metallopeptidase | VO01_RS09445 | Not Available | Negative | 1987415 - 1988767 | 48006.8 |
| hypothetical protein | VO01_RS17815 | Not Available | Negative | 1988831 - 1989358 | 18064.3 |
| hypothetical protein | VO01_RS09455 | Not Available | Negative | 1989745 - 1990110 | 12933.2 |
| aldo/keto reductase | VO01_RS09460 | Not Available | Negative | 1990462 - 1991601 | 40937.6 |
| ybhb/ybcl family raf kinase inhibitor-like protein | VO01_RS09465 | Not Available | Positive | 1992004 - 1992534 | 18236.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
