Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imidazoleglycerol-phosphate dehydratase hisb | VO01_RS09320 | Not Available | Negative | 1962365 - 1962973 | 21625.7 |
| lysm peptidoglycan-binding domain-containing protein | VO01_RS09325 | Not Available | Negative | 1963084 - 1963464 | 12671.1 |
| transcriptional repressor lexa | VO01_RS09330 | Not Available | Positive | 1963826 - 1964506 | 24323.4 |
| gtpase hflx | VO01_RS09335 | Not Available | Negative | 1964592 - 1966157 | 56335.4 |
| class i sam-dependent methyltransferase | VO01_RS09340 | Not Available | Positive | 1966198 - 1966815 | 22011.2 |
| diaminopimelate epimerase | VO01_RS09345 | Not Available | Negative | 1966858 - 1967736 | 30522.0 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | VO01_RS09350 | Not Available | Negative | 1967746 - 1968669 | 33222.8 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | VO01_RS09355 | Not Available | Negative | 1968666 - 1970252 | 57113.6 |
| regulatory protein recx | VO01_RS17810 | Not Available | Negative | 1970303 - 1971352 | 38474.6 |
| recombinase reca | VO01_RS09365 | Not Available | Negative | 1971473 - 1972561 | 38380.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
