Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate abc transporter substrate-binding protein | VO01_RS09270 | Not Available | Negative | 1955137 - 1956060 | 32145.6 |
| amino acid abc transporter atp-binding protein | VO01_RS09275 | Not Available | Negative | 1956209 - 1956937 | 26283.0 |
| trmh family rna methyltransferase | VO01_RS09280 | Not Available | Negative | 1957150 - 1957950 | 28225.9 |
| 50s ribosomal protein l20 | VO01_RS09285 | Not Available | Negative | 1958014 - 1958406 | 14574.8 |
| 50s ribosomal protein l35 | VO01_RS09290 | Not Available | Negative | 1958453 - 1958647 | 7201.07 |
| translation initiation factor if-3 | VO01_RS09295 | Not Available | Negative | 1958640 - 1959233 | 22061.4 |
| duf1844 domain-containing protein | VO01_RS09300 | Not Available | Positive | 1959625 - 1960089 | 15743.1 |
| sseb family protein | VO01_RS09305 | Not Available | Negative | 1960148 - 1960915 | 26416.2 |
| bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase pria | VO01_RS09310 | Not Available | Negative | 1960912 - 1961661 | 26025.6 |
| imidazole glycerol phosphate synthase subunit hish | VO01_RS09315 | Not Available | Negative | 1961727 - 1962368 | 22604.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
