Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | VO01_RS16345 | Not Available | Negative | 1930068 - 1931027 | 34266.8 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 1932168 - 1932284 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 1932401 - 1935520 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 1935949 - 1937469 | Not Available |
| tyrosine--trna ligase | VO01_RS09195 | Not Available | Negative | 1938028 - 1939356 | 48292.1 |
| hypothetical protein | VO01_RS09200 | Not Available | Positive | 1939523 - 1940200 | 23393.7 |
| hypothetical protein | VO01_RS09205 | Not Available | Positive | 1940197 - 1940796 | 19719.6 |
| dna-3-methyladenine glycosylase | VO01_RS09210 | Not Available | Negative | 1940815 - 1941429 | 21403.5 |
| hypothetical protein | VO01_RS17475 | Not Available | Negative | 1941437 - 1941574 | 4989.33 |
| argininosuccinate lyase | VO01_RS09215 | Not Available | Negative | 1941571 - 1943052 | 52644.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
