Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| segregation and condensation protein a | VO01_RS09130 | Not Available | Negative | 1920068 - 1920829 | 27430.9 |
| para family protein | VO01_RS09135 | Not Available | Negative | 1920912 - 1921796 | 31369.0 |
| site-specific tyrosine recombinase xerd | VO01_RS09140 | Not Available | Negative | 1921868 - 1922854 | 35195.3 |
| nudix domain-containing protein | VO01_RS09145 | Not Available | Negative | 1922851 - 1923558 | 25621.7 |
| ctp synthase | VO01_RS09150 | Not Available | Negative | 1923555 - 1925297 | 62570.0 |
| dna repair protein recn | VO01_RS09155 | Not Available | Negative | 1925371 - 1927086 | 60194.1 |
| nad kinase | VO01_RS09160 | Not Available | Negative | 1927079 - 1928038 | 34654.6 |
| tlya family rna methyltransferase | VO01_RS09165 | Not Available | Negative | 1928002 - 1928862 | 29354.0 |
| hypothetical protein | VO01_RS17470 | Not Available | Negative | 1928855 - 1929028 | 6307.2 |
| had-iia family hydrolase | VO01_RS09170 | Not Available | Negative | 1929038 - 1930078 | 36005.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
