Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pasta domain-containing protein | VO01_RS09080 | Not Available | Negative | 1907833 - 1909152 | 43331.5 |
| duf3696 domain-containing protein | VO01_RS17070 | Not Available | Positive | 1910089 - 1911831 | 64238.4 |
| Trna-pro | Not Available | Not Available | Positive | 1912844 - 1912917 | Not Available |
| hypothetical protein | VO01_RS09095 | Not Available | Negative | 1912991 - 1913530 | 19564.1 |
| acyl-coa dehydrogenase family protein | VO01_RS09100 | Not Available | Positive | 1913794 - 1915131 | 48150.8 |
| ribosome biogenesis gtpase der | VO01_RS09105 | Not Available | Negative | 1915220 - 1916728 | 55536.3 |
| (d)cmp kinase | VO01_RS09110 | Not Available | Negative | 1916768 - 1917511 | 26259.5 |
| prephenate dehydrogenase | VO01_RS09115 | Not Available | Negative | 1917508 - 1918626 | 38111.8 |
| pseudouridine synthase | VO01_RS09120 | Not Available | Negative | 1918623 - 1919483 | 30941.5 |
| smc-scp complex subunit scpb | VO01_RS09125 | Not Available | Negative | 1919467 - 1920078 | 21846.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
