Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| llm class flavin-dependent oxidoreductase | VO01_RS09030 | Not Available | Negative | 1892560 - 1893930 | 50648.8 |
| trypsin-like serine peptidase | VO01_RS09035 | Not Available | Positive | 1894194 - 1895129 | 32765.4 |
| mfs transporter | VO01_RS09040 | Not Available | Positive | 1895347 - 1896822 | 51749.1 |
| gmc family oxidoreductase | VO01_RS09045 | Not Available | Negative | 1896877 - 1898451 | 57552.6 |
| aldehyde dehydrogenase family protein | VO01_RS09050 | Not Available | Negative | 1898472 - 1899971 | 52471.0 |
| choline bcct transporter bett | VO01_RS09055 | Not Available | Negative | 1899968 - 1902076 | 76059.0 |
| hypothetical protein | VO01_RS09060 | Not Available | Positive | 1902282 - 1902899 | 23092.0 |
| helix-turn-helix domain-containing protein | VO01_RS09065 | Not Available | Positive | 1902896 - 1903939 | 38752.2 |
| gnat family n-acetyltransferase | VO01_RS09070 | Not Available | Positive | 1903986 - 1904477 | 17433.3 |
| dead/deah box helicase | VO01_RS09075 | Not Available | Positive | 1904601 - 1907825 | 116716.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
