Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS17355 | Not Available | Negative | 1863672 - 1864160 | 16716.8 |
| phosphatase pap2 family protein | VO01_RS08895 | Not Available | Negative | 1864241 - 1864948 | 25022.4 |
| hypothetical protein | VO01_RS08900 | Not Available | Negative | 1864842 - 1865210 | 12124.2 |
| ntp transferase domain-containing protein | VO01_RS08905 | Not Available | Positive | 1865277 - 1865921 | 21524.3 |
| iron-sulfur cluster scaffold-like protein | VO01_RS08910 | Not Available | Negative | 1865938 - 1866471 | 18476.9 |
| gamma-glutamyltransferase family protein | VO01_RS08915 | Not Available | Negative | 1866468 - 1868219 | 61401.3 |
| mfs transporter | VO01_RS08920 | Not Available | Positive | 1868380 - 1869819 | 49305.2 |
| llm class flavin-dependent oxidoreductase | VO01_RS08925 | Not Available | Positive | 1869919 - 1870947 | 37178.1 |
| esterase | VO01_RS08930 | Not Available | Positive | 1871063 - 1871878 | 28897.2 |
| hypothetical protein | VO01_RS17065 | Not Available | Positive | 1872578 - 1872856 | 10272.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
