Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| extracellular solute-binding protein | VO01_RS08740 | Not Available | Positive | 1832624 - 1833943 | 47371.5 |
| abc transporter permease | VO01_RS08745 | Not Available | Positive | 1833940 - 1834893 | 33145.9 |
| abc transporter permease | VO01_RS08750 | Not Available | Positive | 1834893 - 1835708 | 29438.9 |
| abc transporter atp-binding protein | VO01_RS08755 | Not Available | Positive | 1835716 - 1836894 | 41614.9 |
| inositol monophosphatase family protein | VO01_RS08760 | Not Available | Positive | 1836891 - 1838483 | 54648.0 |
| nudix domain-containing protein | VO01_RS08765 | Not Available | Negative | 1838480 - 1839436 | 33353.2 |
| hypothetical protein | VO01_RS08770 | Not Available | Positive | 1839477 - 1839956 | 17390.7 |
| nadp-dependent oxidoreductase | VO01_RS08775 | Not Available | Negative | 1840011 - 1841018 | 35343.9 |
| pr6pr family membrane protein | VO01_RS08780 | Not Available | Positive | 1841135 - 1841920 | 27814.5 |
| hypothetical protein | VO01_RS08785 | Not Available | Positive | 1841978 - 1842721 | 25752.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
