Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| merr family transcriptional regulator | VO01_RS08690 | Not Available | Negative | 1823168 - 1823710 | 19339.0 |
| merr family transcriptional regulator | VO01_RS08695 | Not Available | Negative | 1824006 - 1824707 | 25482.8 |
| fha domain-containing protein | VO01_RS08700 | Not Available | Negative | 1824707 - 1825189 | 17179.0 |
| cation:dicarboxylate symporter family transporter | VO01_RS08705 | Not Available | Negative | 1825278 - 1826663 | 48136.9 |
| atp-binding protein | VO01_RS08710 | Not Available | Positive | 1826804 - 1828540 | 60053.9 |
| 30s ribosomal protein s6 | VO01_RS08715 | Not Available | Positive | 1828537 - 1829238 | 24658.4 |
| m4 family metallopeptidase | VO01_RS08720 | Not Available | Positive | 1829335 - 1830381 | 36974.7 |
| protealysin inhibitor emfourin | VO01_RS08725 | Not Available | Positive | 1830382 - 1830654 | 9763.39 |
| duf3097 domain-containing protein | VO01_RS08730 | Not Available | Positive | 1830651 - 1831511 | 31653.9 |
| laci family dna-binding transcriptional regulator | VO01_RS08735 | Not Available | Negative | 1831552 - 1832625 | 37500.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
