Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | VO01_RS00355 | Not Available | Positive | 70189 - 70914 | 25702.9 |
| abc transporter permease | VO01_RS00360 | Not Available | Positive | 70911 - 71654 | 25952.3 |
| hypothetical protein | VO01_RS00365 | Not Available | Positive | 71753 - 72385 | 21125.6 |
| mfs transporter | VO01_RS00370 | Not Available | Negative | 72450 - 73838 | 47950.3 |
| hypothetical protein | VO01_RS16960 | Not Available | Negative | 74014 - 74877 | 31615.1 |
| phosphotransferase | VO01_RS00375 | Not Available | Positive | 75089 - 75841 | 27103.2 |
| nudix hydrolase | VO01_RS00380 | Not Available | Negative | 75846 - 76247 | 14421.3 |
| marr family winged helix-turn-helix transcriptional regulator | VO01_RS00385 | Not Available | Negative | 76244 - 76738 | 17364.7 |
| hypothetical protein | VO01_RS00390 | Not Available | Positive | 76968 - 77639 | 21767.6 |
| s26 family signal peptidase | VO01_RS00395 | Not Available | Positive | 77726 - 78916 | 41605.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
