Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospho-n-acetylmuramoyl-pentapeptide- transferase | VO01_RS08590 | Not Available | Negative | 1797571 - 1798680 | 39662.1 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | VO01_RS08595 | Not Available | Negative | 1798674 - 1800083 | 49594.5 |
| mur ligase family protein | VO01_RS08600 | Not Available | Negative | 1800085 - 1801629 | 54716.3 |
| peptidoglycan d,d-transpeptidase ftsi family protein | VO01_RS08605 | Not Available | Negative | 1801642 - 1803423 | 62453.6 |
| hypothetical protein | VO01_RS08610 | Not Available | Negative | 1803515 - 1804189 | 22636.8 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | VO01_RS08615 | Not Available | Negative | 1804186 - 1805142 | 34788.9 |
| division/cell wall cluster transcriptional repressor mraz | VO01_RS08620 | Not Available | Negative | 1805246 - 1805677 | 16177.2 |
| duf3040 domain-containing protein | VO01_RS08625 | Not Available | Negative | 1806016 - 1806411 | 14043.1 |
| polyprenyl synthetase family protein | VO01_RS08630 | Not Available | Positive | 1806489 - 1807610 | 40242.8 |
| rv2175c family dna-binding protein | VO01_RS08635 | Not Available | Negative | 1807663 - 1808004 | 12518.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
