Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diviva domain-containing protein | VO01_RS08540 | Not Available | Negative | 1787270 - 1787917 | 23638.3 |
| yggt family protein | VO01_RS08545 | Not Available | Negative | 1788057 - 1788356 | 11175.4 |
| cell division protein sepf | VO01_RS08550 | Not Available | Negative | 1788423 - 1788920 | 17980.3 |
| yggs family pyridoxal phosphate-dependent enzyme | VO01_RS08555 | Not Available | Negative | 1788969 - 1789700 | 25575.2 |
| cell division protein ftsz | VO01_RS08560 | Not Available | Negative | 1789697 - 1790836 | 38567.8 |
| ftsq-type potra domain-containing protein | VO01_RS08565 | Not Available | Negative | 1790974 - 1792209 | 43665.9 |
| udp-n-acetylmuramate--l-alanine ligase | VO01_RS08570 | Not Available | Negative | 1792206 - 1793636 | 50170.9 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | VO01_RS08575 | Not Available | Negative | 1793681 - 1794781 | 38159.2 |
| putative lipid ii flippase ftsw | VO01_RS08580 | Not Available | Negative | 1794778 - 1796067 | 45437.2 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | VO01_RS08585 | Not Available | Negative | 1796024 - 1797568 | 54788.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
