Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit ii | VO01_RS08490 | Not Available | Negative | 1775457 - 1776368 | 33962.9 |
| iron-sulfur cluster insertion protein erpa | VO01_RS08495 | Not Available | Negative | 1776493 - 1776855 | 12905.0 |
| dipeptidase | VO01_RS08500 | Not Available | Negative | 1776990 - 1778411 | 49189.6 |
| duf3043 domain-containing protein | VO01_RS08505 | Not Available | Positive | 1778452 - 1779045 | 21847.7 |
| quinone-dependent dihydroorotate dehydrogenase | VO01_RS08510 | Not Available | Negative | 1779113 - 1780147 | 36578.3 |
| transcriptional regulator nrdr | VO01_RS08515 | Not Available | Negative | 1780211 - 1780684 | 17312.5 |
| histidinol dehydrogenase | VO01_RS08520 | Not Available | Negative | 1780702 - 1782006 | 44456.9 |
| flavin reductase family protein | VO01_RS08525 | Not Available | Positive | 1782068 - 1782583 | 17633.9 |
| dna polymerase iii subunit alpha | VO01_RS08530 | Not Available | Negative | 1782638 - 1786150 | 129388.0 |
| rlua family pseudouridine synthase | VO01_RS08535 | Not Available | Negative | 1786227 - 1787144 | 32939.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
