Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroxyacetone kinase phosphoryl donor subunit dham | VO01_RS08400 | Not Available | Negative | 1757811 - 1758545 | 23618.5 |
| dihydroxyacetone kinase subunit dhal | VO01_RS08405 | Not Available | Negative | 1758542 - 1759195 | 21471.1 |
| dihydroxyacetone kinase subunit dhak | VO01_RS08410 | Not Available | Negative | 1759199 - 1760200 | 34582.4 |
| mip/aquaporin family protein | VO01_RS08415 | Not Available | Positive | 1760431 - 1761234 | 27324.6 |
| glycerol kinase glpk | VO01_RS08420 | Not Available | Positive | 1761262 - 1762779 | 55390.0 |
| sos response-associated peptidase | VO01_RS08425 | Not Available | Negative | 1762879 - 1763625 | 26858.6 |
| anthranilate phosphoribosyltransferase | VO01_RS08430 | Not Available | Negative | 1763673 - 1764728 | 36565.8 |
| heme-copper oxidase subunit iii | VO01_RS08435 | Not Available | Positive | 1764809 - 1765447 | 23282.4 |
| cytochrome c | VO01_RS08440 | Not Available | Positive | 1765474 - 1766274 | 27349.7 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | VO01_RS08445 | Not Available | Positive | 1766320 - 1767429 | 40091.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
