Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine--trna ligase | VO01_RS08350 | Not Available | Negative | 1750386 - 1752440 | 76615.5 |
| Trna-val | Not Available | Not Available | Positive | 1752601 - 1752675 | Not Available |
| Trna-cys | Not Available | Not Available | Positive | 1752686 - 1752759 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 1752807 - 1752881 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 1753162 - 1753234 | Not Available |
| sugar-binding transcriptional regulator | VO01_RS08375 | Not Available | Negative | 1753275 - 1754234 | 34482.3 |
| glycerol-3-phosphate dehydrogenase/oxidase | VO01_RS08380 | Not Available | Positive | 1754346 - 1756106 | 63625.3 |
| glutathione peroxidase | VO01_RS08385 | Not Available | Positive | 1756223 - 1756714 | 18000.4 |
| mycothiol transferase | VO01_RS08390 | Not Available | Negative | 1756766 - 1757281 | 18246.3 |
| ychj family protein | VO01_RS08395 | Not Available | Positive | 1757371 - 1757787 | 15199.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
