Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein translocase subunit secf | VO01_RS08300 | Not Available | Negative | 1741629 - 1742639 | 35717.0 |
| protein translocase subunit secd | VO01_RS08305 | Not Available | Negative | 1742639 - 1744432 | 61891.7 |
| preprotein translocase subunit yajc | VO01_RS08310 | Not Available | Negative | 1744562 - 1744945 | 13763.4 |
| holliday junction branch migration dna helicase ruvb | VO01_RS08315 | Not Available | Negative | 1745022 - 1746101 | 38309.2 |
| holliday junction branch migration protein ruva | VO01_RS08320 | Not Available | Negative | 1746098 - 1746742 | 21979.6 |
| crossover junction endodeoxyribonuclease ruvc | VO01_RS08325 | Not Available | Negative | 1746759 - 1747367 | 20857.1 |
| yebc/pmpr family dna-binding transcriptional regulator | VO01_RS08330 | Not Available | Negative | 1747419 - 1748186 | 27447.1 |
| pyridoxal 5'-phosphate synthase glutaminase subunit pdxt | VO01_RS08335 | Not Available | Negative | 1748264 - 1748893 | 21680.1 |
| pyridoxal 5'-phosphate synthase lyase subunit pdxs | VO01_RS08340 | Not Available | Negative | 1748883 - 1749785 | 31464.8 |
| hit family protein | VO01_RS08345 | Not Available | Negative | 1749799 - 1750383 | 21330.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
