Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holliday junction resolvase ruvx | VO01_RS08250 | Not Available | Negative | 1730500 - 1730985 | 16774.1 |
| alanine--trna ligase | VO01_RS08255 | Not Available | Negative | 1730985 - 1733642 | 95506.7 |
| hypothetical protein | VO01_RS08260 | Not Available | Negative | 1733648 - 1733869 | 7998.62 |
| 30s ribosomal protein s4 | VO01_RS08265 | Not Available | Negative | 1734068 - 1734697 | 23654.9 |
| replication-associated recombination protein a | VO01_RS08270 | Not Available | Negative | 1734947 - 1736407 | 52081.7 |
| hypothetical protein | VO01_RS08275 | Not Available | Positive | 1736481 - 1736756 | 9523.24 |
| duf349 domain-containing protein | VO01_RS08280 | Not Available | Positive | 1736999 - 1738231 | 45538.3 |
| hypothetical protein | VO01_RS08285 | Not Available | Positive | 1738325 - 1738933 | 21763.2 |
| rela/spot family protein | VO01_RS08290 | Not Available | Negative | 1738920 - 1741169 | 83213.6 |
| rhodanese-like domain-containing protein | VO01_RS08295 | Not Available | Negative | 1741273 - 1741632 | 12485.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
