Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS17275 | Not Available | Negative | 62451 - 62621 | 5618.12 |
| daptide biosynthesis ripp recognition protein | VO01_RS17280 | Not Available | Positive | 62740 - 63825 | 38298.0 |
| daptide-type ripp biosynthesis aminotransferase | VO01_RS00330 | Not Available | Positive | 63825 - 65057 | 43569.8 |
| iron-containing alcohol dehydrogenase | VO01_RS16235 | Not Available | Positive | 65126 - 66307 | 42342.4 |
| daptide-type ripp | VO01_RS17980 | Not Available | Positive | 66294 - 66422 | 4721.59 |
| daptide-type ripp | VO01_RS17985 | Not Available | Positive | 66469 - 66591 | 4417.39 |
| hypothetical protein | VO01_RS17990 | Not Available | Positive | 66640 - 66765 | 4573.4 |
| daptide-type ripp biosynthesis methyltransferase | VO01_RS16240 | Not Available | Positive | 66835 - 67665 | 29635.5 |
| daptide biosynthesis intramembrane metalloprotease | VO01_RS16245 | Not Available | Positive | 67662 - 69341 | 59379.2 |
| aminoglycoside phosphotransferase | VO01_RS00350 | Not Available | Positive | 69338 - 70186 | 30148.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
