Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase large subunit | VO01_RS08150 | Not Available | Negative | 1708010 - 1711300 | 117573.0 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | VO01_RS08155 | Not Available | Negative | 1711300 - 1712469 | 41742.1 |
| hypothetical protein | VO01_RS08160 | Not Available | Negative | 1712475 - 1713002 | 18932.0 |
| dihydroorotase | VO01_RS08165 | Not Available | Negative | 1712999 - 1714408 | 48909.0 |
| aspartate carbamoyltransferase catalytic subunit | VO01_RS08170 | Not Available | Negative | 1714405 - 1715361 | 33980.8 |
| bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase pyrr | VO01_RS08175 | Not Available | Negative | 1715358 - 1715942 | 20788.9 |
| acetate--coa ligase | VO01_RS08180 | Not Available | Negative | 1716056 - 1718104 | 72989.7 |
| abc transporter permease | VO01_RS08185 | Not Available | Negative | 1718179 - 1719042 | 29854.4 |
| aliphatic sulfonate abc transporter substrate-binding protein | VO01_RS08190 | Not Available | Negative | 1719039 - 1720091 | 36037.9 |
| abc transporter atp-binding protein | VO01_RS08195 | Not Available | Negative | 1720159 - 1720998 | 29338.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
