Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycerate kinase | VO01_RS07950 | Not Available | Negative | 1660346 - 1661560 | 41947.8 |
| type i glyceraldehyde-3-phosphate dehydrogenase | VO01_RS07955 | Not Available | Negative | 1661567 - 1662574 | 35796.4 |
| superoxide dismutase | VO01_RS07960 | Not Available | Negative | 1662701 - 1663327 | 23251.3 |
| dna-binding protein whia | VO01_RS07965 | Not Available | Negative | 1663496 - 1664476 | 35458.8 |
| rnase adapter rapz | VO01_RS07970 | Not Available | Negative | 1664506 - 1665381 | 31565.9 |
| excinuclease abc subunit uvrc | VO01_RS07975 | Not Available | Negative | 1665458 - 1667386 | 71590.0 |
| excinuclease abc subunit uvra | VO01_RS07980 | Not Available | Negative | 1667386 - 1670307 | 106637.0 |
| excinuclease abc subunit uvrb | VO01_RS07985 | Not Available | Negative | 1670387 - 1672453 | 77461.7 |
| dephospho-coa kinase | VO01_RS07990 | Not Available | Negative | 1672464 - 1673078 | 21587.8 |
| 30s ribosomal protein s1 | VO01_RS07995 | Not Available | Negative | 1673181 - 1674635 | 53067.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
