Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme o synthase | VO01_RS07900 | Not Available | Negative | 1649215 - 1650135 | 33697.0 |
| transketolase | VO01_RS07905 | Not Available | Positive | 1650309 - 1652399 | 75038.0 |
| transaldolase | VO01_RS07910 | Not Available | Positive | 1652551 - 1653666 | 39821.7 |
| glucose-6-phosphate isomerase | VO01_RS07915 | Not Available | Positive | 1653663 - 1655258 | 54720.8 |
| glucose-6-phosphate dehydrogenase | VO01_RS07920 | Not Available | Positive | 1655297 - 1656838 | 57906.6 |
| glucose-6-phosphate dehydrogenase assembly protein opca | VO01_RS07925 | Not Available | Positive | 1656835 - 1657833 | 35407.9 |
| 6-phosphogluconolactonase | VO01_RS07930 | Not Available | Positive | 1657830 - 1658600 | 27455.6 |
| rna polymerase-binding protein rbpa | VO01_RS07935 | Not Available | Negative | 1658780 - 1659148 | 13284.6 |
| preprotein translocase subunit secg | VO01_RS07940 | Not Available | Negative | 1659160 - 1659411 | 8682.08 |
| triose-phosphate isomerase | VO01_RS07945 | Not Available | Negative | 1659552 - 1660355 | 28011.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
