Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3099 domain-containing protein | VO01_RS07850 | Not Available | Positive | 1640184 - 1640642 | 15948.0 |
| hypothetical protein | VO01_RS07855 | Not Available | Positive | 1640639 - 1640896 | 9082.68 |
| surf1 family protein | VO01_RS07860 | Not Available | Positive | 1640893 - 1641738 | 31148.6 |
| abc-f family atp-binding cassette domain-containing protein | VO01_RS07865 | Not Available | Negative | 1641790 - 1643388 | 57702.2 |
| metal-sulfur cluster assembly factor | VO01_RS07870 | Not Available | Negative | 1643612 - 1643947 | 12387.7 |
| fe-s cluster assembly atpase sufc | VO01_RS07875 | Not Available | Negative | 1643944 - 1644714 | 27870.3 |
| non-heme iron oxygenase ferredoxin subunit | VO01_RS07880 | Not Available | Negative | 1644728 - 1645048 | 11250.3 |
| fe-s cluster assembly protein sufd | VO01_RS07885 | Not Available | Negative | 1645045 - 1646256 | 42872.9 |
| fe-s cluster assembly protein sufb | VO01_RS07890 | Not Available | Negative | 1646257 - 1647675 | 52548.3 |
| cox15/ctaa family protein | VO01_RS07895 | Not Available | Positive | 1647942 - 1648952 | 35489.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
