Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| undecaprenyl-diphosphate phosphatase | VO01_RS07705 | Not Available | Negative | 1610185 - 1611003 | 28728.7 |
| m20/m25/m40 family metallo-hydrolase | VO01_RS07710 | Not Available | Negative | 1611046 - 1612356 | 46873.9 |
| Trna-leu | Not Available | Not Available | Positive | 1612471 - 1612556 | Not Available |
| magnesium/cobalt transporter cora | VO01_RS07720 | Not Available | Positive | 1612695 - 1613711 | 38375.8 |
| nad-dependent epimerase/dehydratase family protein | VO01_RS07725 | Not Available | Positive | 1613756 - 1614721 | 34925.1 |
| 30s ribosomal protein s6 | VO01_RS07730 | Not Available | Negative | 1614746 - 1616017 | 44710.4 |
| abc transporter permease | VO01_RS07735 | Not Available | Positive | 1616336 - 1616977 | 21980.9 |
| abc transporter atp-binding protein | VO01_RS07740 | Not Available | Positive | 1616970 - 1618250 | 45250.3 |
| abc transporter permease | VO01_RS07745 | Not Available | Positive | 1618247 - 1619014 | 26071.0 |
| glycine betaine abc transporter substrate-binding protein | VO01_RS07750 | Not Available | Positive | 1619017 - 1620024 | 35836.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
