Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS00275 | Not Available | Negative | 54494 - 54751 | 9184.22 |
| hypothetical protein | VO01_RS00280 | Not Available | Negative | 54756 - 55001 | 8659.78 |
| hypothetical protein | VO01_RS00285 | Not Available | Negative | 55120 - 56388 | 43495.0 |
| pyroglutamyl-peptidase i | VO01_RS00290 | Not Available | Positive | 56529 - 57170 | 22733.9 |
| fad-dependent oxidoreductase | VO01_RS00295 | Not Available | Positive | 57407 - 58594 | 40845.8 |
| hypothetical protein | VO01_RS00300 | Not Available | Positive | 58684 - 58875 | 6678.9 |
| hypothetical protein | VO01_RS00305 | Not Available | Positive | 58963 - 59436 | 17642.8 |
| imma/irre family metallo-endopeptidase | VO01_RS16230 | Not Available | Positive | 59474 - 59866 | 14863.8 |
| hypothetical protein | VO01_RS00315 | Not Available | Positive | 59866 - 61020 | 42489.1 |
| alpha/beta hydrolase family protein | VO01_RS00320 | Not Available | Negative | 61037 - 62185 | 41614.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
