Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | VO01_RS07655 | Not Available | Negative | 1599005 - 1601476 | 92209.1 |
| twin-arginine translocase subunit tatc | VO01_RS07660 | Not Available | Negative | 1601572 - 1602324 | 27582.7 |
| sec-independent protein translocase subunit tata | VO01_RS07665 | Not Available | Negative | 1602379 - 1602723 | 13122.4 |
| helix-turn-helix transcriptional regulator | VO01_RS07670 | Not Available | Negative | 1602924 - 1603913 | 35789.1 |
| helix-turn-helix transcriptional regulator | VO01_RS07675 | Not Available | Negative | 1603910 - 1604917 | 37245.1 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | VO01_RS07680 | Not Available | Negative | 1604966 - 1606009 | 34261.4 |
| trna (adenine-n1)-methyltransferase | VO01_RS07685 | Not Available | Negative | 1606071 - 1607135 | 37734.0 |
| had family hydrolase | VO01_RS07690 | Not Available | Negative | 1607132 - 1607827 | 24514.1 |
| pac2 family protein | VO01_RS07695 | Not Available | Positive | 1607920 - 1608870 | 34222.9 |
| cysteine--1-d-myo-inosityl 2-amino-2-deoxy-alpha-d-glucopyranoside ligase | VO01_RS07700 | Not Available | Negative | 1608897 - 1610180 | 45391.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
