Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3000 domain-containing protein | VO01_RS07465 | Not Available | Negative | 1566525 - 1567121 | 20940.5 |
| dihydrofolate reductase family protein | VO01_RS07470 | Not Available | Negative | 1567216 - 1567962 | 25868.9 |
| sufe family protein | VO01_RS07475 | Not Available | Negative | 1567959 - 1568399 | 15816.0 |
| sulfurtransferase | VO01_RS07480 | Not Available | Negative | 1568396 - 1569307 | 33698.0 |
| cell division protein zape | VO01_RS07485 | Not Available | Positive | 1569475 - 1570539 | 37938.0 |
| ammonium transporter | VO01_RS07490 | Not Available | Positive | 1570790 - 1572076 | 43845.8 |
| aldo/keto reductase | VO01_RS07495 | Not Available | Positive | 1572314 - 1573153 | 30493.8 |
| marr family transcriptional regulator | VO01_RS07500 | Not Available | Positive | 1573350 - 1573781 | 15357.3 |
| putative protein n(5)-glutamine methyltransferase | VO01_RS07505 | Not Available | Positive | 1573778 - 1574629 | 29164.6 |
| 30s ribosomal protein s6 | VO01_RS07510 | Not Available | Positive | 1575045 - 1576084 | 36084.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
