Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| proteasome assembly chaperone family protein | VO01_RS07365 | Not Available | Positive | 1539570 - 1540490 | 33754.6 |
| mfs transporter | VO01_RS07370 | Not Available | Positive | 1540551 - 1541873 | 46440.9 |
| rna polymerase sigma factor | VO01_RS07375 | Not Available | Positive | 1542122 - 1543591 | 52197.8 |
| murt ligase domain-containing protein | VO01_RS07380 | Not Available | Positive | 1543595 - 1544875 | 44843.7 |
| type 1 glutamine amidotransferase | VO01_RS07385 | Not Available | Positive | 1544872 - 1545606 | 25119.1 |
| hypothetical protein | VO01_RS07390 | Not Available | Negative | 1545709 - 1545936 | 8461.72 |
| type iia dna topoisomerase subunit b | VO01_RS07395 | Not Available | Positive | 1546151 - 1548229 | 75583.3 |
| dna topoisomerase (atp-hydrolyzing) subunit a | VO01_RS07400 | Not Available | Negative | 1548309 - 1550855 | 90482.8 |
| alkaline phosphatase family protein | VO01_RS07405 | Not Available | Positive | 1550941 - 1552080 | 40363.1 |
| septation protein seph | VO01_RS07410 | Not Available | Negative | 1552133 - 1553329 | 43286.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
